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Title page for ETD etd-04042008-103627


Type of Document Dissertation
Author Silvernail, Nathan James
Author's Email Address nsilvern@nd.edu
URN etd-04042008-103627
Title Understanding the Structural and Vibrational Features of Heme Diatomics
Degree Doctor of Philosophy
Department Chemistry and Biochemistry
Advisory Committee
Advisor Name Title
W. Robert Scheidt Committee Chair
Jennifer DuBois Committee Member
Kenneth W. Henderson Committee Member
Slavi C. Sevov Committee Member
Keywords
  • nitric oxide
  • carbon monoxide
  • iron porphyrin
  • heme carbonyl
  • Nuclear Resonance Vibrational Spectroscopy
  • heme nitrosyl
Date of Defense 2008-04-02
Availability unrestricted
Abstract
This dissertation concerns itself with the interaction of diatomic molecules with heme. More specifically, five- and six-coordinate low-spin iron(II) porphyrinates will be considered. Complexes of the form [Fe(Porph)(XO)(L)] (X = N or C and L = 1-MeIm, 1,2-DiMeIm, 2-MeHIm, 4-MePip, CO, or no ligand) have been synthesized. These systems have been extensively studied using X-ray crystallography, Mössbauer spectroscopy, infrared absorption spectroscopy, resonance Raman spectroscopy, and Nuclear Resonance Vibrational Spectroscopy (NRVS), thereby providing new information regarding structural and vibrational characteristics of hemes coordinated with diatomic molecules. The first structural characterization of a 5-coordinate heme-CO, bis-carbonyl ligated heme, and completely ordered six-coordinate heme-NO are reported. Temperature-dependent information has also been acquired. This information reveals the temperature dependence of the structural and vibrational parameters of heme complexes, especially the biologically relevant Fe-His bond, and relates them to thermal expansion and contraction in the solid state. Finally, the NRVS technique is used extensively to reveal the Fe vibrational dynamics of heme coordinated by diatomic molecules. These studies reveal several reactive vibrational modes associated with ligand ejection and activation which have not previously been described.
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